You can package your Hydra application along with its configuration. There is a working example here.
You can run it with:
$ python examples/advanced/hydra_app_example/hydra_app/main.py
To install it, use:
$ pip install examples/advanced/hydra_app_example
Successfully installed hydra-app-0.1
Run the installed app with:
The installed app will use the packaged configuration files.